PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008916
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRF
Protein Properties Length: 172aa    MW: 19936.8 Da    PI: 9.913
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008916genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC66.73.1e-21124167143
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgr.srsrksk 43 
                  d+epgrCrRtDGKkWRCs++ l+++k+C++H+hrgr +rsrk++
  Lus10008916 124 DDEPGRCRRTDGKKWRCSKESLPDHKYCQKHIHRGRlNRSRKRV 167
                  68**********************************44555555 PP
2QLQ42.22.4e-155690337
          QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 FT +Qlq+L  Q ++yKy+ a++ vP+ Ll++i++
  Lus10008916 56 FTVSQLQELQLQWMIYKYIEAGLRVPQTLLVPIWN 90
                 9*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-55490IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.9055590IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-105689IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.269124169IPR014977WRC domain
PfamPF088791.1E-17126165IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MENNESQPVY QSESSSLPRR IPTVGLGLGL MTGNDEDDRN HDTTLQLGKL RLGVVFTVSQ  60
LQELQLQWMI YKYIEAGLRV PQTLLVPIWN SFHSAVPFVN APTLSLSWTQ WREMSRYKKG  120
VDLDDEPGRC RRTDGKKWRC SKESLPDHKY CQKHIHRGRL NRSRKRVELM Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537666.13e-36PREDICTED: growth-regulating factor 4-like
SwissprotQ6ZIK51e-31GRF4_ORYSJ; Growth-regulating factor 4
TrEMBLI1LFW53e-36I1LFW5_SOYBN; Uncharacterized protein
STRINGGLYMA11G01060.19e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141951017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.18e-32growth-regulating factor 2